Improving salt-affected soil health using different strategies is of great significance for Sustainable Development Goals. The effects of biochar as a sustainable carbon negative soil amendment on phosphorous (P) pools in the degraded salt-affected soils of the of coastal wetlands (as one of the primary blue carbon ecosystems) with halophyte litter input under different water conditions (the two intrinsic characteristics of coastal wetlands) are poorly understood. Thus, a corn straw derived biochar (CBC) was added into a coastal salt-affected soil collected from the Yellow River Delta to investigate its effect on P fractions and availability under the input of three different local halophyte litters (i.e., Suaeda salsa, Imperata cylindrica and Phragmites australis) and under the unflooded and flooded water conditions. The results showed that the individual input of Suaeda salsa increased soil P availability by 28.2-40.9 %, but Imperata cylindrica and Phragmites australis had little effect on P avail-ability. CBC individual amendment more efficiently enhanced P availability in the unflooded soil than the flooded soil. However, the co-amendment of CBC with litters showed little synergistic effect on P availability. CBC sharply increased the proportion of Ca-bound labile P fraction, but moderately lifted the proportion of Al/ Fe-bound mediumly labile P fraction. CBC-enhanced P availability and altered inorganic P fractions were mainly resulted from the provision of labile inherent P by biochar, improved soil properties (i.e., increased CEC), and altered bacterial community composition (i.e., elevated abundance of P-solubilizing and phosphate -accumulating bacteria). These findings give new insights into understanding P biogeochemical cycling in the coastal salt-affected soils amended with biochars, and will be helpful to develop biochar-based technologies for enhancing P pools and improving soil health of the blue carbon ecosystems.