Manure is a leading source of methane (CH4), nitrous oxide (N2O), and ammonia (NH3) emissions, and alternative manure management practices can help society meet climate goals and mitigate air pollution. Recent studies show that biochar-composting can substantially reduce emissions from manure. However, most studies test only one type of biochar applied at a single application rate, leading to high variation in emission reductions between studies. Here, we measured greenhouse gas and NH3 emissions during biochar-composting of dairy manure with biochar applied at 5% or 20%, by mass, and made from walnut shells, almond shells, or almond clippings. We found little difference in emissions between biochar type. However, we found that the 20% application rates increased CH4 emissions and decreased N2O and NH3 emissions, resulting in a net reduction in global warming potential (GWP). We attribute this result to biochar increasing the formation of compost aggregates, which likely acted as anaerobic reactors for methanogenesis and complete denitrification. Biochar may have further fueled CH4 production and N2O consumption by acting as an electron shuttle within aggregates. We recommend lower application rates, as we found that the 5% treatments in our study led to a similar reduction in GWP without increasing CH4 emissions. We conducted a dairy manure biochar-composting experiment and found that biochar, when applied at a high application rate, increased both cumulative methane emissions and compost aggregation. Aggregates formed during biochar-composting may act as anoxic biogeochemical reactors for methanogenesis and complete denitrification, which may be further fueled by the electron donating capacity of biochar. Biochar-composting operations should be managed to prevent the formation of aggregates in order to minimize methane emissions during composting.image